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  1. Community maintained workflows & tools (with examples)

    Common Workflow Language 80 44 Built by @portah @FarahZKhan @mr-c @skanwal @tetron
  2. Reproducible Analyses for Bioinformatics - Java

    Common Workflow Language 61 25 Built by @sivkovic @markosbg @milos-ljubinkovic @simonovic86 @AleksandarPetrovicSBG
  3. Common Workflow Language 18 7 Built by @briandoconnor @david4096 @tetron @denis-yuen @geoffjentry
  4. Correct misassemblies using linked reads

    Common Workflow Language 12 1 Built by @sjackman @lcoombe
  5. metagenomic analysis server pipeline scripts

    Common Workflow Language 12 16 Built by @teharrison @jaredbischof @wilke @wgerlach @wtangiit
  6. CWL tools and workflows for GGR

    Common Workflow Language 11 10 Built by @alexbarrera @dleehr @denis-yuen @gitter-badger
  7. Toolbox for OCR post-correction

    Common Workflow Language 10 1 Built by @jvdzwaan
  8. tools and workflows in common workflow language

    Common Workflow Language 8 1 Built by @yyabuki @inutano
  9. H3ABioNet 16S package

    Common Workflow Language 7 4 Built by @grbot @mepstein-gh @ShakunBaichoo @mr-c @phelelani
  10. Common Workflow Language 4 7 Built by @briandoconnor @pvanheus @zo0z @hocinebendou
  11. Roslin is a portable and reproducible workflow infrastructure for Cancer Genomic Sequencing Analysis

    Common Workflow Language 3 6 Built by @hisplan @nikhil @lordzappo @mskbot @allanbolipata
  12. Workflow for GA4GH/DREAM challenge (phase 2)

    Common Workflow Language 2 2 Built by @michael-kotliar @tyomach
  13. Common Workflow Language 2 1 Built by @slottad @DCGenomics
  14. Pipelines developed and used by 4DN-DCIC in Common Workflow Language

    Common Workflow Language 2 1 Built by @SooLee @dhawalsjain @burakalver
  15. Archivos autocompletado .cwl para Template-Latex

    Common Workflow Language 1 Built by @ppizarror
  16. HGI arvados pipelines (crunch scripts, container Dockerfiles, pipeline templates, etc)

    Common Workflow Language 1 3 Built by @jrandall @ThomasHickman @pkarnati2004 @yejinyou @wtsi-mercury
  17. Common Workflow Language 1 1 Built by @yuankunzhu @zhangb1
  18. Common Workflow Language 1 3 Built by @wilke @folker @teharrison @mr-c @paczian
  19. cwl workflows and tools for BioWardrobe project

    Common Workflow Language 1 3 Built by @michael-kotliar @portah @tyomach
  20. CMO Innovation Lab

    Common Workflow Language 1 Built by @ionox0
  21. metagenomic analysis server pipeline scripts

    Common Workflow Language 1 16 Built by @teharrison @jaredbischof @wilke @wgerlach @wtangiit
  22. Common Workflow Language Built by @kellrott
  23. Common Workflow Language 1 Built by @slottad
  24. RNA SEQ processing pipeline written with CWL

    Common Workflow Language Built by @byee4
  25. Dockstore implementation of cgpBigWig utility

    Common Workflow Language Built by @invalid-email-address @drjsanger
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